What Will You Learn in These Workshops?
Complete Analysis Workflow
From raw data processing to biological interpretation, you will master every step of the analytical pipeline with real examples and practical exercises.
Rigorous Quality Control
Learn to critically evaluate your data, identify potential technical problems, and apply standard quality criteria using professional tools.
Interpretation of Results
Develop skills to translate quantitative metrics into meaningful biological insights that drive your research hypotheses forward.
Personalized Advice
Consult directly with bioinformatics experts about your own projects and get specific guidance for your future analysis needs.
Workshop #1:
Single-Cell Gene Expression Analysis
with 10x Genomics
Master Single-Cell RNA-seq Analysis
During this intensive workshop, participants will learn the complete workflow for analyzing single-cell gene expression data. We will begin with a brief introduction to experimental design and then, using example datasets, progress through raw data processing and quality assessment.
Upon completion, you will have the necessary tools to interpret biological data and turn them into significant discoveries for your research.
Workshop #2:
Spatial Transcriptomics Analysis with Visium HD
From Images to Biological Insights
During this hands-on workshop, participants will learn the complete workflow for analyzing Visium HD spatial transcriptomics data, using a sample experiment as an example. We will start with raw data processing, move on to quality assessment, and then explore advanced visualizations and cell type mapping.
By the end, each participant will have the opportunity to discuss their own analysis plans with 10x Genomics experts and receive personalized guidance for their specific projects.
Workshop #3:
Spatial Transcriptomics Analysis with Xenium
From Images to Biological Insights with Xenium
During this hands-on workshop, participants will learn the complete workflow for analyzing Xenium in situ data, using a real experiment as an example. We will cover key steps including image processing, transcript detection, cell segmentation, and data visualization.
By the end of the session, each participant will have the chance to discuss their own Xenium analysis plans with 10x Genomics experts and receive personalized guidance to support their specific research goals.
Key Tools and Platforms
Cell Ranger
Primary analysis pipeline for processing single-cell sequencing data, from FASTQ files to high-quality gene expression matrices.
Space Ranger
Specialized tool for processing Visium HD spatial transcriptomics data, integrating image and gene expression information.
Loupe Browser
Intuitive interface for interactive data exploration, visual quality control, and exploratory analysis of 10x Genomics results.
Additionally, we will explore complementary tools such as RNA velocity for cell trajectory analysis and GSEA for functional enrichment analysis, expanding your bioinformatics arsenal.